Strain Passport - Cereibacter sphaeroides

1. Taxonomy

Taxonomy
Domain Bacteria
Phylum Proteobacteria
Class Alphaproteobacteria
Order Rhodobacterales
Family Rhodobacteraceae
Genus Cereibacter
Species Cereibacter sphaeroides

2. Assembly Statistics

Assembly Statistics
MAGID MAG20
Size (bp) 3810141
N.contigs 641
GC (%) 68.9
N50 (bp) 8026
Coding Density 82.9
N.CDSs 3658
Genome Completeness
Completeness 92.54
Contamination 1.61
Strain heterogeneity 25.00

3. Metabolism and Function (KEGG)

KEGG Function Annotation

Cereibacter sphaeroides KEGG Functional Classification

KEGG Resistome

name Type Level1 Level2 Description KO
ko01504 Gene variants Tetracycline resistance genes Transporters K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein K08151
ko01504 Gene variants Macrolide resistance genes Transporters K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein K08217
ko01504 Gene variants Phenicol resistance genes Acetyltransferases K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] K00638
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF [MD:M00726] K14205 mprF, fmtC; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] K14205
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexAB-OprM [MD:M00718] K03585 acrA, mexA, adeI, smeD, mtrC, cmeA; membrane fusion protein, multidrug efflux system K03585
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexAB-OprM [MD:M00718] K18138 acrB, mexB, adeJ, smeE, mtrD, cmeB; multidrug efflux pump K18138
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexJK-OprM [MD:M00642] K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor K18301
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump MexPQ-OpmE [MD:M00769] K19591 cueR; MerR family transcriptional regulator, copper efflux regulator K19591
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump BpeEF-OprC [MD:M00698] K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC K18900

KEGG Toxins

name Type Level1 Level2 Description KO
ko02042 Type II toxins: Membrane damaging toxins Pore-forming toxins, Other K03699 tlyC; magnesium and cobalt exporter, CNNM family tlyC; magnesium and cobalt exporter, CNNM family K03699
ko02042 Type II toxins: Membrane damaging toxins Pore-forming toxins, Other K11068 hlyIII; hemolysin III hlyIII; hemolysin III K11068

KEGG Bacterial Virulence

GeneID KO Description PFAM
MAG20_FKLHKN_17180 K03596 GTP-binding protein LepA GTP-binding protein LepA C-terminus [PF06421.15]…

Carbon Metabolism

Nitrogen Metabolism

4. Expert systems

AMRFinderPlus Antimicrobial Resistance

AMRFinderPlus
locus pscc.product gene_family class subclass
FKLHKN_00550 Beta-lactamase blaRHO BETA-LACTAM BETA-LACTAM
FKLHKN_11455 Chloramphenicol acetyltransferase catB PHENICOL CHLORAMPHENICOL

Virulence factors (VFDB)

## No VFDB data

5. BacDive

BacDive
Species Cereibacter sphaeroides
ncbi_taxid 1063
taxid_matching_level species
type_strain no
medium_name RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)
medium_link NA
strain_history NA
gram NA
length NA
width NA
motility NA
oxygen_tolerance anaerobe
spore NA
aggregation_score NA
GC_content NA
antibiotic_resistance_chebi NA
antibiotic_resistance_metabolite NA

6. Publications

7. U.S. Patents

First 10 patents out of 84

patent_number patent_title
10072305 Real-time PCR for the detection of pathogens
10077431 Phage therapy of pseudomonas infections
10105380 Glycoclusters and their pharmaceutical use as antibacterials
10117905 Compositions and methods to prevent cancer with cupredoxins
10159751 ExPEC glycoconjugate vaccine formulations
10179146 Compositions and methods for mitigating drug resistant bacteria
10221222 Dermaseptin-type and piscidin-type antimicrobial peptides
10238689 Methods for combating bacterial infections by killing persister cells with mitomycin C and/or cisplatin
10258640 Method of inhibiting quorum sensing in Pseudomonas aeruginosa
10260051 Phage therapy of Pseudomonas infections